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HapMap LD data

readytogo
in Genetics

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Hi,

 

I am hoping someone can help me - I want to check if there is LD across a gene locus I am studying. I have accessed the HapMap LD data and managed to download it to give me D', r2 and LOD values between the SNPs within the region of interest.

 

How do you interpret this? I mean - how can I use this info to make judgement on whether there is LD across this region (approximately 200kb region).

 

What do I do with the data?

 

Please help! I have posted on here before and not had a single reply - I would really really appreciate it.

 

Thank you

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