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comparison of data

jorj102
in Biochemistry and Molecular Biology

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lets say i have data from IN SITU from about ~3000 cells with expressionn of 84 genes (expression between 0-1) , and i want to compare it to data from scRNA-seq for the same 84 genes but this time its from ~1000 cells (expression between 0-10).

after i analyzed it and imputed the data with MAGIC , now i want to compare the data i have from the magic_dge with the IN-SITU , but i cant think of a way comparing the data from these 2 methods.

 

help.

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